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Environmental Microbiology
Environmental Microbiology covers cultivation of diverse microbes, physiological ecology and nucleic acid techniques in environmental microbiology. Both applied methods (such as cultivation and preparation) and theoretical modeling (such as bioenergetic calculation programs and imaging) are discussed. A significant number of chapters on methods in activity measurement are included. Environmental Microbiology is volume 397 in the critically acclaimed laboratory standard for more than forty years, Methods in Enzymology. Methods in Enzymology is now available online at ScienceDirect - full-text online of volumes 1 onwards. · Cultivation & Physiological Ecology · Imaging of Cells & Microscale Architecture · Nucleic Acids-based Molecular Ecology
Organohalide-Respiring Bacteria
This book summarizes the current state of knowledge concerning bacteria that use halogenated organic compounds as respiratory electron acceptors. The discovery of organohalide-respiring bacteria has expanded the range of electron acceptors used for energy conservation, and serves as a prime example of how scientific discoveries are enabling innovative engineering solutions that have transformed remediation practice. Individual chapters provide in-depth background information on the discovery, isolation, phylogeny, biochemistry, genomic features, and ecology of individual organohalide-respiring genera, including Dehalococcoides, Dehalogenimonas, Dehalobacter, Desulfitobacterium and Sulfurospirillum, as well as organohalide-respiring members of the Deltaproteobacteria. The book introduces readers to the fascinating biology of organohalide-respiring bacteria, offering a valuable resource for students, engineers and practitioners alike.
Genomic Adaptation for Organohalide Respiration of Vinyl Chloride and Other Priority Pollutants by the Anaerobic Bacterium Dehalococcoides
Vinyl chloride (VC) is a widespread groundwater pollutant and Group 1 carcinogen. Microbial respiration of VC is both critical for complete remediation of chloroethenes in situ, and a unique physiology only observed by certain strains of Dehalococcoides. Two different genes independently encoding VC respiration in Dehalococcoides, vcrA and bvcA, were identified previously, each a member of the diverse family of reductive dehalogenase homologous genes, or rdhA. In this thesis I report that vcrA and bvcA are among a subset of putative 'foreign' rdhA with a low GC3 codon usage that favors the nucleotide T, even though tRNAs recognizing T-ending codons are categorically absent in Dehalococcoides...
Bioaugmentation for Groundwater Remediation
This volume provides a review of the past 10 to 15 years of intensive research, development and demonstrations that have been on the forefront of developing bioaugmentation into a viable remedial technology. This volume provides both a primer on the basic microbial processes involved in bioaugmentation, as well as a thorough summary of the methodology for implementing the technology. This reference volume will serve as a valuable resource for environmental remediation professionals who seek to understand, evaluate, and implement bioaugmentation.
Metagenomics and Microbial Ecology
Microorganisms comprise the greatest genetic diversity in the natural ecosystem, and characterization of these microbes is an essential step towards discovering novel products or understanding complex biological mechanisms. The advancement of metagenomics coupled with the introduction of high-throughput, cost-effective NGS technology has expanded the possibilities of microbial research in various biological systems. In addition to traditional culture and biochemical characteristics, omics approaches (metagenomics, metaproteomics, and metatranscriptomics) are useful for analyzing complete microbial communities and their functional attributes in various environments. Metagenomics and Microbial...
A Numerical Investigation of Metabolic Reductive Dechlorination in DNAPL Source Zones
Among the most intractable environmental remediation problems are those involving the release of dense non-aqueous phase liquids (DNAPLs), such as chlorinated solvents, to the subsurface. Research efforts have focused on the use of numerical models to investigate reductions in contaminant concentrations due to partial mass removal and improvements in the performance of complementary source zone remediation technologies. Previous numerical investigations, however, have been limited to two-dimensional systems. Furthermore, a lack of models capable of simulating the most promising complementary technology, metabolic reductive dechlorination, has limited its application. This work developed and ...
Dehalogenation
Halogenated organic compounds constitute one of the largest groups of environmental chemicals. The industrial production of new halogenated organic compounds has increased throughout the last century peaking in the 1960s, and continuing in widespread use today. Organohalides are integral to a variety of industrial applications, including use as solvents, degreasing agents, biocides, pharmaceuticals, plasticizers, hydraulic and heat transfer fluids, and intermediates for chemical synthesis, to name a few. It is important to recognize the beneficial aspects of halogenated organic compounds, as well as their potentially deleterious impact on the environment and health. Recognition ofthe adverse...
Microbiome Engineering
This reference book compiles the latest techniques and applications of microbiome engineering. Microbial communities interact dynamically with their hosts, creating a considerable impact on the host and their ecosystem. This book introduces readers to microbiomes and microbiome engineering. It covers topics like omics tools in microbial research, strategies to engineer human microbiomes, the application of synthetic biology to build smart microbes, and the future of microbiome engineering. It includes the application of microbiome engineering in improving human health, livestock, and agricultural productivity. The book is intended for researchers and students in the fields of microbiology and biotechnology.
Phyto and Microbial Remediation of Heavy Metals and Radionuclides in the Environment
This book examines the role that bioremediation can play in the detoxification of soil, water, and air to improve environmental and human health, with a specific focus on heavy metals and radionuclides. Environmental pollution, whether by natural or human causes, with industrial activities being a key player, is a challenge facing all nations across the world. While treatment has typically required the use of expensive technology, one promising solution is the use of phytoremediation, in which plants act by metabolizing or sequestering pollutants. This eco-friendly solution is a good alternative to the standard methods of soil and water treatments. This book provides not only the basic defin...
